MNBC-ME identifies mobile elements and their species from metagenomic sequences

These files provide supplementary data underlying the article:

prok_Next150.fasta.gz: 13441246 150bp-long reads randomly generated from the prokaryotic test genomes, simulating reads sequenced by NextSeq (0.05 coverage)

prok_Mi300.fasta.gz: 6723326 300bp-long reads randomly generated from the prokaryotic test genomes, simulating reads sequenced by MiSeq (0.05 coverage)

prok_NanoND.fasta.gz: 371870 reads of normally distributed 1kb-10kb lengths randomly generated from the prokaryotic test genomes, simulating reads sequenced by Nanopore (0.05 coverage)

plsdb_Next150.fasta.gz: 535249 150bp-long reads randomly generated from the test plasmids, simulating reads sequenced by NextSeq (0.05 coverage)

plsdb_Mi300.fasta.gz: 271361 300bp-long reads randomly generated from the test plasmids, simulating reads sequenced by MiSeq (0.05 coverage)

plsdb_NanoND.fasta.gz: 24226 reads of normally distributed 1kb-10kb lengths randomly generated from the test plasmids, simulating reads sequenced by Nanopore (0.05 coverage)

virus_Next150.fasta.gz: 43381 150bp-long reads randomly generated from the viral test genomes, simulating reads sequenced by NextSeq (0.05 coverage)

virus_Mi300.fasta.gz: 23004 300bp-long reads randomly generated from the viral test genomes, simulating reads sequenced by MiSeq (0.05 coverage)

virus_NanoND.fasta.gz: 4885 reads of normally distributed 1kb-10kb lengths randomly generated from the viral test genomes, simulating reads sequenced by Nanopore (0.05 coverage)

db_list.txt: List of 139052 prokaryotic, plasmidic and viral index filenames in the reference database, indicating the sequence accessions used to build the index files

taxonomy.txt: Taxonomy file of the 139052 training sequences. Host taxa are given for plasmids.

prok_training_and_test_sequences_list.txt: List of all 56107 prokaryotic training and test sequence accesions.

plsdb_training_and_test_sequences_list.txt: List of all 72556 training and test plasmid accesions in the PLSDB database version 2024_05_31_v2

virus_training_and_test_sequences_list.txt: List of all 40353 training and test plasmid accesions in the Virus-Host database release 227