1b.Network_Reconstruction_files
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下载链接：
https://figshare.com/articles/dataset/1b_Network_Reconstruction_files/7707437
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资源简介：
In Network_Reconstruction_files.tgz are the major files required to run network reconstruction and some output files:
- geneNamesTree # gene orthology of cichlid IDs, Ensembl IDs and gene descriptions
- Hs-Mm_EnsemblOrthology.txt # Ensembl orthology of Human and Mouse gene IDs
- full_orthologs_map3c.txt # contains the published orthologs gene IDs for mapping used previously
- list_k10 # list of k10 module numbers
- list_species # list of species
- OGIDS.txt # orthogroups
- OGIDS.txt5 # processed orthogroups file
- *_07.extrap.annotations.blast_out # extrapolation of motifs in cichlid gene promoters using human and mouse orthology
- mz-speciesspecnames_clusterassign.txt # Arboretum module assignment of M. zebra genes
- pn-speciesspecnames_clusterassign.txt # Arboretum module assignment of P. nyererei genes
- ab-speciesspecnames_clusterassign.txt # Arboretum module assignment of A. burtoni genes
- nb-speciesspecnames_clusterassign.txt # Arboretum module assignment of N. brichardi genes
- on-speciesspecnames_clusterassign.txt # Arboretum module assignment of O. niloticus genes
- geneNamesMapping.txt # gene orthology of cichlid IDs, Ensembl IDs and gene descriptions
- MzPnAbNbOnGenome-BLAST_PresentNULLOGIDS-noCand-noTF.txt2 # 4209 orthogroups with NULL orthogroup IDs for one or species are actually present in the genome (mis-annotations etc.) and not lost/absent
- motifenr_merged-TFBSs_map2d.txt # output of processing files in TFBSs - Motif Discovery in gene promoter regions
- tftgco_merged.txt # output of processing TF-TG co-expression files
创建时间：
2020-11-11
