Rapid screening of hospital admissions to detect asymptomatic carriers of resistant bacteria can prevent pathogen outbreaks. However, the resulting isolates rarely have their genome sequenced due to c
Additional file 3: Table S3. NL4-3 splice site counts in HIV-1 expressing samples. Reads overlapping potential SD/SA sites were counted and pooled for each HIV-1 expressing sample (infected T cells; T
fastQ files with preserved headers containing channel information. The multiple files must first be combined into a single FastQ file prior to analysis (e.g., cat *.fastq > all_reads.fastq). Concat
