Metabarcoding pipeline and scripts

Dryad2017-01-01 更新2026-04-13 收录

元条形码分析

生物信息学流程

数据链接：

http://datadryad.org/resource/doi:10.5061/dryad.8v528/1 数据链接链接失效反馈

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资源简介：

Full metabarcoding pipeline and R scripts to produce figures and statistical analysis in the paper. Includes intermediate scripts, always use the script with the latest version number.

创建时间：

2017-01-01

Placement files and comparison from A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades.

元条形码分析

系统发育分析

The two jplace files contain the results of EPA and pplacer. The .txt file is the comparison of these files conducted by the software genesis.

DataCite Commons2020-10-15 更新60

Diadema antillarum purge_dups output files and --dual-scaf assembly files

基因组组装

生物信息学流程

Note that the filename ragtag.HiFi.polished.simplified.filtered.fa.gz is the same file as the RefSeq assembly file available on NCBI with the assession number GCA_040938485.1. The filenames ragtag.H

Zenodo2026-06-13 更新40

Dataset for "Metabarcoding reveals high-resolution biogeographic and metaphylogeographic patterns through marine barriers"

生物地理学

元条形码分析

Fasta file with the sequences after pairing, demultiplexing and dereplicating. Table .csv table with the sample code equivalences of the fasta file. File .pdf with the networks of the MOTUs selected f

Mendeley Data2024-03-27 更新30

Benchmarking information of the assembly pipeline.

生物信息学流程

计算性能基准测试

Table provides a summary of computational resources used for each step in our assembly pipeline (Fig 1A). Columns reflect an identifier for the pipeline step, bioinformatics tool used, the total numbe

Figshare2021-08-03 更新50

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud

RNA测序分析

生物信息学流程

Massively parallel RNA sequencing (RNA-seq) has rapidly become the assay of choice for interrogating RNA transcript abundance and diversity. This article provides a detailed introduction to fundamenta

NIAID Data Ecosystem40

Metabarcoding pipeline and scripts

资源简介：

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