Differential expression analyses and novel candidate gene identification
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https://dataverse.tdl.org/citation?persistentId=doi:10.18738/T8/AMG5VD
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资源简介：
These scripts assess differential expression between monogamous and non-monogamous species between all clades and across evolutionary subgroupings. Different approaches to differential expression analysis were used to identify novel candidates associated with monogamy.
--RRHO.html: R script that performs the Rank Rank Hypergeometric Overlap (RRHO) between all pairwise clades, generates lists of most up- and down-regulated OGGs, and generates the RRHO and summary plots
--DESeq2_volcanoplots.html: R script that performs DESeq2 of different evolutionary subgroups and generates volcano plots.
--NovelCandidates.html: Integrate Log2 fold difference, DESeq2 all vertebrates, and RRHO most up- and down-regulated genes to generate a heatmap of novel candidates
提供机构：
Texas Data Repository
创建时间：
2018-12-11
