Gramene: A curated, open-source, integrated data resource for comparative functional genomics in plants

Gramene's purpose is to provide added value to plant genomics data sets available within the public sector, which will facilitate researchers' ability to understand the plant genomes and take advantage of genomic sequence known in one species for identifying and understanding corresponding genes, pathways and phenotypes in other plant species. It represents a broad spectrum of species ranging from unicellular photo-autotrophs, algae, monocots, dicots and other important taxonomic clades. Within Plant Reactome, a database portal of Gramene, there are over 60 plant genomes as well as pathways for more than 80 species.Gramene的使命在于为公共领域可用的植物基因组学数据集提供增值服务，助力研究人员深入解析植物基因组，并依托某一物种中已探明的基因组序列，识别并解析其他植物物种中的同源基因、调控通路与表型特征。该数据库覆盖的物种类群极为广泛，涵盖单细胞光合自养生物、藻类、单子叶植物、双子叶植物以及其他重要的分类演化支。作为Gramene旗下的数据库门户，植物Reactome（Plant Reactome）目前已收录超过60个植物基因组，同时包含80余个物种的调控通路数据。

搜集汇总

背景与挑战

背景概述

Gramene是一个开放、集成的植物比较功能基因组学数据资源，旨在为公共植物基因组数据提供增值，帮助研究人员跨物种理解基因、通路和表型。它涵盖从藻类到单子叶、双子叶植物的广泛物种，并提供基因组浏览器、植物Reactome、植物泛基因组等多种工具，支持基因组注释、变异分析、通路浏览和查询功能。