Evaluation of single motif STAP model on 45 TF-ChIP data sets.

Column CC(M1): Pearson's correlation coefficient between ChIP scores and STAP scores on 45 data sets. A correlation coefficient of 0.15 has p-value4] (see text). Results shown are from 4-fold cross-validation. Column SPCC(M1): correlation coefficient after “partialing out” the effect of accessibility scores. Bold and italic fonts indicate cases where SPCC is better or worse respectively than CC.Data set nomenclature: “TF_SRC_STAGE” represents ChIP data for transcription factor “TF”. “SRC_STAGE” is of the form “[B/M/F/C/R][chip/seq]_sX” or “[B/M/F][chip/seq]_sX_Y”, where “B” represents BDTNP data, “M” represents modENCODE data, “F” represents data from the Furlong laboratory [24], “R” represents data from the Rushlow laboratory [68], “C” represents data from the Cavalli laboratory [62], “chip” represents ChIP-chip, “seq” represents ChIP-seq, while “X” and optionally “Y” indicate developmental stage numbers for the Drosophila embryo.