LMAS Test Dataset - BMock12 Community Standards
收藏NIAID Data Ecosystem2026-03-14 收录
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https://zenodo.org/record/7092431
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资源简介：
The twelve bacterial replicons of the BMock12 Community Standards were used as reference. It includes the following strains:
Species
Sample ID
Depth of Coverage (x)
Muricauda sp. ES.050
2615840527
618.76
Thioclava sp. ES.032
2615840533
78.32
Cohaesibacter sp. ES.047
2615840601
170.59
Propionibacteriaceae bacterium
2615840646
31.90
Marinobacter sp. LV10R510-8
2615840697
447.83
Marinobacter sp. LV10MA510-1
2616644829
135.05
Psychrobacter sp. LV10R520-6
2617270709
425.47
Micromonospora echinaurantiaca
2623620557
14.91
Micromonospora echinofusca
2623620567
18.19
Micromonospora coxensis
2623620609
0.02
Halomonas sp. HL-4
2623620617
507.08
Halomonas sp. HL-93
2623620618
579.87
The raw sequence data of the mock communities, with an even distribution of species, is available at:
SRR8073716
For the sake of a less resource-intense evaluation we downsampled to have 20% of the reads available in the original sample and further processed only these. The main challenges of this data set are possibly to assemble the genomes of the three Micromonospora spp. and the two Halomonas spp. strains, which have an ANIb >0.84 and 0.98, respectively. The two Marinobacter spp. have an ANIb of 0.78.
创建时间：
2022-11-13
