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DENT-seq for genome-wide strand-specific identification of DNA single-strand break sites with single nucleotide resolution

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https://www.ncbi.nlm.nih.gov/sra/SRP270070
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Development of a novel methodology to identify single-strand break sites ('nicks') in DNA. Nick detection is based on consecutive nick translations with dPTP and dKTP, synthetic degenerate nucleotides, and then with biotin-dUTP which provide mutational and enrichment signals in the final sequence data. DENT-seq (formerly NickSeq) is utilized to identify off-target nicking by Cas9 nickase in human genomic DNA.
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2020-11-25
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