Virus-host interactions along a grassland soil depth profile

This repository contains data used in Muscatt et al. 2022 (preprint). c1.ntw.gz = vConTACT2 network output file DNAP_plus_ref.faa.gz = fasta amino acid file containing DNA polymerase protein sequences used for phylogenetic tree DNAP_tree.gz = tree file for jumbo phage phylogenetic tree based on DNA polymerase gene edges.csv.gz = edges for drawing vConTACT2 network gene_to_genome.csv.gz = viral gene to genome index used as input to vConTACT2 genome_by_genome.csv.gz = viral cluster statuses outputted by vConTACT2 MAG_bins.fna.gz = fasta nucleotide file containing 285 microbial MAG bins previously assembled by Sharrar et al. 2020 nodes.csv.gz = nodes for drawing vConTACT2 network rpS3.fna.gz = fasta nucleotide file containing 1516 rpS3 sequences vOTU_prediction.csv.gz = stats on viral scaffold prediction vOTU_proteins.faa.gz = fasta amino acid file containing XXX dsDNA vOTU genes vOTUs.fna.gz = fasta nucleotide file containing 10,196 dsDNA vOTUs The Supplementary table titles are as follows: Table S1: Assembly statistics for sample libraries. Table S2: DNA vOTU raw reads. Table S3: Sources of hits to viral sequences in PhageClouds database. Table S4: Microbial OTU normalised coverage. Table S5: Raw read bacterial class taxonomy. Table S6: Annotations of viral-encoded auxiliary metabolic genes. Table S7: Microbial MAG normalised coverage. Table S8: Annotations of viral genes under positive selection.