Additional file 1 of Genome-wide analysis of PIN genes in cultivated peanuts (Arachis hypogaea L.): identification, subcellular localization, evolution, and expression patterns

Supplementary Material 1: Figure 1. Comparison of motifs among AtPINs, OsPINs, and AhPINs. Figure 2. The number of cis-acting regulatory elements in the promoter region of AhPINs gene. Figure 3. Chromosomal distribution of AhPINs. Figure 4. Accession number and samples information of RNA-seq data used in this study. Figure 5. The qRT-PCR showing the expression levels of six proteins that interacted with AhPINs within the interaction network. Table 1. PIN proteins from Arabidopsis, rice and peanut. Table 2. Domain of AhPIN genes predicted using HMMER with default parameters. Table 3. Characteristics of cis-acting regulatory elements in the promoter regions of the AhPIN genes. Table 4. The duplication information of AhPINs. Table 5. The Ka/Ks ratios and estimated divergence time between peanut and other species. Table 6. FPKM value of AhPINs. Table 7. Raw data of qRT-PCR. Table 8. Protein interaction analysis of AhPINs proteins. Table 9. The homologous peanut proteins within the network and FPKM values in the RNA-seq data. Table 10. Significant Go term of proteins in the interaction network. Table 11. Primers for qRT-PCR. Table 12. Primers for constructing the 1300-GFP vector