Gene-sets used for roast analysis: Polarization and endotoxin tolerance signatures, and known Salmonella susceptibility genes.

Gene-set for endotoxin tolerance was taken from Pena et al (https://doi.org/10.1016/j.ebiom.2014.10.003). Gene-set for polarization was taken from Becker et al (https://doi.org/10.1038/srep13351). Gene-set for Salmonella susceptibility was taken from BioCarta (h_salmonellaPathway) (https://doi.org/10.1089/152791601750294344), as collated in the Molecular Signatures Database (MSigDB.v6.2) (https://doi.org/10.1073/pnas.0506580102; https://doi.org/10.1093/bioinformatics/btr260), supplemented with genes identified in the literature, as listed in the final column of the table. (CSV)