DMSP synthesis genes distinguish two types of DMSP producer phenotypes - Raw data
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Raw data provided here can be used to reproduce figures in the manuscript using scrips at https://github.com/emcparland/DMSPgenesDatasets provided here are as follows...hmm searchesDSYB/TpMT2_blastraw.txt: raw TBLASTN results, filtered and aligned to create hmm profilesDSYB/TpMT2.hmm: hmm profiles used to search MMETSP proteins and the Ocean Gene Atlasisolate resultsfinal_DSYB/TpMT2.txt files: filtered results from tblastn (prokaryotes) and hmm searches for dsyB/DSYB and TpMT2forFig1.csv files: data to make Fig 1 in main text and Supp Table 1reblast resultsDSYB/TpMT2_reblast.txt: raw results from the blastp reblast to identify potential prokaryote contaminationdatasets for phylogeny.phy file: alignments for creating tree file to make treesRAxML file: tree file used to make tree in main textTARA hmm searchesabundance_matrix files: results from hmm searchesenvironmental_param files: corresponding environmental data
创建时间:
2020-12-10



