Manuscript files

Results from Vasquez et al., 2026. Currently included: faa-reference_genomes-GVOG7-iqtree-perc1.mafft_t: mafft alignment file generated using GVMAGs from this study plus references faa-reference_genomes-GVOG7-iqtree-perc1.treefile: iqtree files generated using GVMAGs from this study plus references gvclass_popgen.tab: results from GVclass ref_query_polb.fasta: alignment file used as input for pplacer. Alignment file was generated using a polb alignment from Endo et al., 2020 and the mafft --addfragments option ref_query_polb.jplace: result from pplacer. Reference tree created by Endo et al., 2020 snps_all_file.rds: R data used in snps_robust_analysis.Rmd snps_robust_analysis.Rmd: R markdown code used to analyze snps from Metapop. LM_singelassembly_bins.gz: GVMAG bins from individual libraries from Lake Mendota (not co-assembly) coassembly_fna.tar.gz: fna files from co-assembly GVMAG bins coassembly_faa.tar.gz: faa files from co-assembly GVMAG bins