Whole-cortex in situ sequencing reveals peripheral input-dependent cellular and area identity - pilot brain

BARseq was used as a standalone spatial transcriptomic method to interrogate the expression of 104 cell type maker genes in one hemisphere of the mouse cortex. Data consist of 40 hemi-coronal sections covering the whole cortex and subcortical areas. Include intermediate processed data and cell type spatial analysis. Associated clustering and gene expression-level analyses are provided at https://github.com/gillislab/barseq_analysis. Accompanying manuscript: https://doi.org/10.1101/2022.11.06.515380