Consensus nucleotide sequences for env and gag for paper: Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models

This is the consensus sequence repository to the manuscript "Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models". It contains the 10% consensus nucleotide sequences of the env and gag (only p24) protein of HIV-1 used for the training and leftout data set. The NGS sequences are available under BioProject ID PRJNA810303 and the corresponding BioSample Accession IDs are SAMN26241863:26242168 and SAMN28728524:SAMN28728529 env_leftout.fasta A fasta file that contains the consensus nucleotide sequences for the env protein for the leftout data set env_nt_274.fasta A fasta file that contains the consensus nucleotide sequences for the env protein for the training data set gag_leftout.fasta A fasta file that contains the consensus nucleotide sequences for the gag protein for the leftout data set gag_nt_274.fasta A fasta file that contains the consensus nucleotide sequences for the gag protein for the training data set