Additional file 1: of COGNATE: comparative gene annotation characterizer

Parameter table. List of parameters recorded by COGNATE. The first sheet of this table contains all 296 parameters evaluated by COGNATE, including the output file in which to find them and explanatory comments. Sorting for parameters, the individual feature (‘of’) or the feature location (‘per’), and files allows to quickly find a parameter of interest. The second sheet contains a comparison of the values recorded by COGNATE when analyzing the latest annotation of the Apis mellifera genome (genome version 4.58, annotation release 1039) to those values given in the publications of the official gene sets version 1 [24] and 3.2 [25] and in the annotation report by NCBI11. As an addition, we included the results of GenomeTools’ ‘gt stat’ command applied to the annotation release 103 GFF file for comparison. (XLSX 43 kb)