Additional file 1: of An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Table S1. Location of PCR primer mismatches to divergent Zika viruses. Table S2. Laboratory and field-collected Zika and West Nile virus samples used in this study and sequencing statistics. Table S3. Primer sequences for tiled amplification of Zika virus. Table S4. Primer sequences for tiled amplification of West Nile virus. Table S5. A list of commands and descriptions available in iVar. Table S6. Contingency table for Fisherâ s exact test to determine if the frequency of the iSNV is significantly higher than the mean error. Table S7. The list of commands in iVar and the tool that was used for validation. (XLSX 39 kb)