Systematic benchmarking of small variant calling pipelines for long-read RNA sequencing data
收藏资源简介：
This Zenodo contains all outputs for the manuscript "Systematic benchmarking of small variant calling pipelines for long-read RNA-seq". The output results are stored in the following zipped folders: GIAB_variants: all output VCF files for GIAB datasets phase: Phased VCF files for GIAB datasets LongBench: VCF files for LongBench datasets LongBench_happy: Evaluations of output VCF to WGS-generated ground truth (CSV files) for LongBench datasets evaluations: Evaluations of output VCF to GIAB ground truth (CSV files) for GIAB datasets, as well as additional analysis variant-comparison-latest.zip: code for generating benchmark results for GIAB datasets VarCallBench-code.zip: code for generating benchmark results for LongBench datasets via Omnibenchmark
