Extended data for :Single-cell RNA sequencing of cerebrospinal fluid reveals the expansion of innate lymphoid cells with upregulated transposable elements in multiple sclerosis

Fig.1: Single-cell analysis of cells from CSF samples of individuals with IIH patients as controls and MS patients Fig.2: Bar plot summarizing the number of significantly upregulated TE subfamilies (logFC>0.5 and adj. p-value <0.05) in each cluster from IIH (a) and MS (b) patients Fig.3: Cell type, GO molecular function, and KEGG pathway enrichment analysis for the list of TFs that probably could bind to the TE-enriched locations in the genome. Supplementary Tables DescriptionTable S1 Gene MarkerTable S2 Differential expression analysis between all clusters in IIH populationTable S3 Differential expression analysis between all clusters in MS populationTable S4 Number of cells in each cluster of IIH samplesTable S5 Number of cells in each cluster of MS samplesTable S6 Retrotransposon-transcription factor associations