(high-temp) No 1. DADA2 Workflow (16S rRNA/ITS) Output

<strong>Output files from the No 1. DADA2 Workflow</strong> page of the SWELTR high-temp study. <strong>16S rRNA Data</strong><br> <strong>ssu18_seqtab.rds</strong>: Sequence table before chimera checking.<br> <strong>ssu18_seqtab.nochim.rds</strong>: Sequence table after chimera checking.<br> <strong>ssu18_tax_silva.rds</strong>: Silva (v138) taxonomy table of ssu18_seqtab.nochim.rds.<br> <strong>ssu18_tax_id.rds</strong>: IDTAXA taxonomy table of ssu18_seqtab.nochim.rds.<br> <br> <br> <strong>ITS Data</strong><br> <strong>its18_seqtab.rds</strong>: Sequence table before chimera checking.<br> <br> <br> File names and descriptions: <br> <strong>its18_seqtab.nochim.rds</strong>: Sequence table after chimera checking. <strong>its18_tax.rds</strong>: UNITE general FASTA release for Fungi (v. 04.02.2020) taxonomy table of its18_seqtab.nochim.rds. <br> Source code for the workflow can be found here: https://github.com/sweltr/high-temp/blob/main/dada2.Rmd<br>