Recovery of Al tolerant and intermediate accessions by loci associated with Al tolerance.

In bold are the least frequent alleles, which are linked in coupling with Al tolerance except for loci with borderline association probabilities and/or small effects on RNRG5d (MII, 5947 and 24804). For each associated locus are shown the minor allele frequencies (MAF), the total number of accessions (n), the number of Al tolerant (T, RNRG5d >80%), intermediate (I, 30%<RNRG5d <80%) and sensitive (S, RNRG5d <30%) accessions. The proportions based on phenotypic selection (phenotypic) are shown at the bottom of the table. Given their genotypes, the Al tolerant accessions in the association panel marked with ‘+’ possess the Al tolerant AltSB allele. The Al tolerant lines CMS226, CMS227 and 9929034, which are breeding derivatives from SC283 (Table S1 in [16]), were excluded from this analysis.