Additional file 3: of Holo-Seq: single-cell sequencing of holo-transcriptome

Table S5. Known and novel antisense transcripts identified from 10 mESC single cells. Table S6. Core and housekeeping genes displayed in Fig. 3e. Table S7. miRNAs detected in 13 mESC single cells. Table S8 snoRNAs detected in 13 mESC single cells. Table S9. tsRNAs detected in 13 mESC single cells. Table S10. List of miRNAs and their potential target genes detected in 7 mESC single cells. Table S11. Super-enhancers and their regulated master miRNA(expressed) in 7 mESC single cells. Table S12. Super-enhancers and their regulated mRNAs (expressed) in 7 mESC single cells. Table S13. miRNAs detected in 32 HCC single cells. Table S14. Six featured transcript groups in Fig. 6a. Table S15. GO term analysis of transcripts of groups 1, 3, 4, 5 in Fig. 6a. Table S16. List of miRNAs and their potential target genes detected in 32 HCC single cells. Table S17. List of oncomiRs (miR-155-5p, miR-221-5p) and their target gene pairs. Table S18. miRNAs and their target gene pairs expressed in negative correlation (p < 0.05) among Exp-sub II&III. Table S19. Super-enhancers and their regulated master genes expressed in 32 HCC single cells. Table S20. Super-enhancers and their regulated master miRNAs expressed in 32 HCC single cells. Table S21. The matrix of super-enhancer regulated master miRNAs and genes’ expression correlation (Spearman r) among 32 HCC single cells. Table S22. List of gene sets in the right panel in Fig. 7b. (XLSX 2860 kb)