Additional file 7 of Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.)

Additional file 7:Expression Results for differentially expressed genes (DEGs) identified after interrogation of PtGen2. This Excel file contains three separate sheets that list the normalized log2 mean ratios for differentially expressed genes exhibiting at least a 1.5-fold difference obtained after pair wise comparisons for each of the three water availability treatments (drought stressed (DS), well-watered (WW), and drought recovered (DR). Note that each table can be sorted by either fold-increase or fold-decrease expression to coincide with results and discussion sections. 7A (DS versus WW) 2445 DEGs with at least 1.5 fold expression difference identified in the DS versus well-WW comparison. 7B (DR versus WW) 76 DEGs with at least 1.5 fold expression difference identified in the DR versus WW comparison. 7C (DS versus DR) 1918 DEGs with at least a 1.5-fold expression difference identified in the DS versus DR comparison. All three tables show Gene ID = the physical address of the spot on the array (metarow, metacolumn, row, column), UniScript = FUNGEN contig ID, Clone_Name = cDNA clone ID, Fold ↑, and Fold ↓values are displayed as normalized log2 mean ratios. All BlastX results are ordered by database name abbreviation followed by accession (BlastX), description (ID), and E-value (Exp). NCBI = NCBI non-redundant, SP = SwissProt. (XLS 1 MB)