Additional file 2 of Costs of reproduction are present but latent in eusocial bumblebee queens

Additional file 2: Table S1. GLMM testing for the effects of treatment and time on queen fertility following R or C treatment. Table S2. Numbers of reads in each mRNA-seq library. Table S3. Numbers of read pairs that pseudoaligned to the B. terrestris transcriptome using Kallisto. Table S4. Gene expression in queen brain following R or C treatment. Table S5. Gene expression in queen fat body following R or C treatment. Table S6. Gene expression in queen ovaries following R or C treatment. Table S7. Statistical overlap of age-related genes between R and C treatments. Table S8. Overlapping genes of age-related genes between R and C treatments. Table S9. GO terms associated with DEGs between R and C treatments. Table S10. Statistical overlap in gene lists between the current study and comparable Drosophila melanogaster studies. Table S11. Overlapping genes in gene lists between current study and comparable Drosophila melanogaster studies; Table S12. Statistical overlap in age-related genes from the current study and ageing-related genes from the Drosophila melanogaster GenAge database. Table S13. Overlapping genes between current study and the Drosophila melanogaster GenAge database. Table S14. Statistical overlap in age-related genes from the current study and ageing-related genes from the TI-J-LiFe network. Table S15. Overlapping genes between the current study and the TI-J-LiFe network. Table S16. Statistical overlap between age-related genes from current study and ageing-related genes from the enzymatic antioxidant gene set. Table S17. Overlapping genes between the current study and the enzymatic antioxidant gene set. Table S18. Differentially expressed genes in queen brain between R and C treatments. Table S19. Differentially expressed genes in queen fat body between R and C treatments. Table S20. Differentially expressed genes in queen ovaries between R and C treatments. Table S21. Statistical overlap in age-related genes within treatment and between treatments. Table S22. Overlapping genes between age-related genes within treatment and between treatments. Table S23. Treatment group, recorded longevity, and sample sizes for each Bombus terrestris queen. Table S24. GLMM model outputs. Table S25. Numbers of read pairs that pseudoaligned to the Bombus terrestris transcriptome using HISAT2. Table S26. Normalised read counts from pseudoalignment of brain mRNA-seq reads against the Holobee barcode database. Table S27. Normalised read counts from pseudoalignment of fat body mRNA-seq reads against the Holobee barcode database. Table S28. Normalised read counts from pseudoalignment of ovaries mRNA-seq reads against the Holobee barcode database.