Data for: Population genomics revealed cryptic species within host-specific zombie-ant fungi (Ophiocordyceps unilateralis)

VCF files of the final sets of single nucleotice polymorphisms (SNPs) inferred from the common genome reference of Ophiocordyceps polyrhachis-furcata for all samples (file NK_jointSNPs_All-on-OPF_final_NoDel_bi.vcf), from the genome reference of O. camponoti-leonardi for the samples belonging to this species (OCL_jointSNPs_passed_bi.vcf), and from the genome reference of O. camponoti-saundersi (OCS_jointSNPs_passed_bi.vcf).