(16s) No 1. DADA2 Workflow (16S rRNA) Output

Output files from the No 1. DADA2 Workflow page of the Bocas Hypoxia study.

File names and descriptions:

**RUN01_read_changes.txt** : Tracking changes in read counts (per sample) from
the beginning to end of the DADA2 workflow.

**RUN02_read_changes.txt** : Tracking changes in read counts (per sample) from
the beginning to end of the DADA2 workflow.

**combo_pipeline.rdata:** contains sequence and taxonomy tables from the DADA2
pipeline needed for subsequent analyses. To see the **Objects** , in R run
_load("combo_pipeline.rdata", verbose=TRUE)
_

1) seqtab.1: Sequence table from Run01 before merging with Run02.

2) seqtab.1: Sequence table from Run02 before merging with Run01.

3) st.sum: merged sequence table before removing chimeras

4) st.all: duplicate of st.sum

5) seqtab: merged sequence table after removing chimeras

6) tax_silva: Silva (v132) taxonomy table of seqtab

7) tax_gg: GreenGenes taxonomy table of seqtab