DIA benchmarking dataset (based on Gotti et al., 2021)

Benchmarking dataset of DIA acquisition methods, based on the manuscript "Extensive and Accurate Benchmarking of DIA Acquisition Methods and Software Tools Using a Complex Proteomic Standard" by Gotti et al. (2021), for the purpose of R vignette describing analysis of DIA data using the QFeatures platform. The raw data are publicly available on the ProteomeXchange platform under identifier PXD026600. Subset of files, containing 'overlapped' in the File Name, were searched using the DIA-NN software. Here, pipeline settings, as well as FASTA files and resulting report.tsv file (here labelled as benchmarkingDIA.tsv) are provided.