HiC matrices from Sungalee et al. for lymphoma cell lines
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Hi-C datasets generated in Sungalee et al. are provided as intra-chromosomal contact lists and matrices, divided by cell line/condition and chromosome. The following lymphoma cell lines/conditions are available: - WSU-DLCL2 (WSU_A485 treatment) - Karpas-422 (Karpas422_A485 treatment) Contact lists are provided as compressed plain-text files in which each row represents a Hi-C contact. Column fields are described below: 1) strand of read 1 (0=forward, 16=reverse) 2) chromosome of read 1 3) position on the chromosome where read 1 aligned 4) strand of read 2 (0=forward, 16=reverse) 5) chromosome of read 2 6) position on the chromosome where read 2 aligned 7) mapping quality of read 1 8) name of the read pair as seen in the FASTQ files 9) mapping quality of read 2
