Structural data used for morphology based prediction of neuronal functional types (Boulanger-Weill et al, 2025 - https://www.biorxiv.org/content/10.1101/2025.03.14.643363v2)

Zebrafish Hindbrain Neuron Classification Structural data for classifying zebrafish hindbrain neurons into functional types based on morphology, as described in Boulanger-Weill, Kämpf et al. (2025). Contents metadata.xlsx Cell inventory with functional labels, training flags, and cell identifiers. Three sheets: PA CLEM EM paGFP.zip 47 photoactivation neurons — SWC skeletons and functional dynamics. clem_zfish1.zip 301 CLEM neurons — registered SWC skeletons, OBJ meshes, synapse locations. em_zfish1.zip 215 EM neurons — registered SWC skeletons and meshes. Coordinate System All coordinates are registered to the Z-Brain atlas reference frame (Randlett et al., 2015). SWC node labels: 1 Soma 2 Axon 3 Dendrite 4 Presynapse 5 Postsynapse Functional Types iMI Motion integrator, ipsilateral cMI Motion integrator, contralateral MON Motion onset SMI Slow motion integrator Usage $ pip install -r requirements.txt $ python scripts/setup_data_paths.py $ python functional_type_prediction/classifier_prediction/pipelines/pipeline_main.py Code jboulanger91/Zebrafish_CLEM