Genome size variation in Cape schoenoid sedges (Schoeneae) and its ecophysiological consequences

Raw data for article 'Genome size variation in Cape schoenoid sedges (Schoeneae) and its ecophysiological consequences' in American Journal of Botany 2024This repository contains:a README file,2 CSV files, `specimen_data.csv` and `species_data.csv`, providing the trait data used in this study, and4 FASTA files, providing the aligned DNA sequence data used for this study's phylogeny reconstruction, and1 tree file, `subset_reconstruction_MCC.tre`, representing the maximum clade credibility tree following the 'subset' phylogeny reconstruction (see methods text; presented in Figure S1 of the article's online supporting information).Naming conventions for the tips in the FASTA files and tree file follow that in Table S3 of the article's online supporting information.The sequences data in the FASTA files were used in 'BEAST' to reconstruct the phylogeny presented in `subset_reconstruction_MCC.tre`. This tree was then used for phylogenetic comparative analyses of the trait data in `species_data.csv` (which is derived from the trait data in `specimen_data.csv`).See the README file and methods section of the paper for further details.

本数据集收录了发表于《美国植物学杂志》2024年的文章《开普斯choenoid莎草（Schoeneae）基因组大小的变异及其生态生理学后果》的原始数据。该数据集包括：一个README文件，两个CSV文件`specimen_data.csv`和`species_data.csv`，提供了研究中使用的性状数据；四个FASTA文件，提供了用于本研究系统发育重建的对齐DNA序列数据；以及一个树文件`subset_reconstruction_MCC.tre`，代表了基于'subset'系统发育重建的最大似然树（参见方法文本；详见文章在线补充信息的图S1）。FASTA文件和树文件的命名规范遵循文章在线补充信息的表S3。在FASTA文件中的序列数据被用于'BEAST'软件重建`subset_reconstruction_MCC.tre`中的系统发育树。此树随后被用于对`species_data.csv`（源自`specimen_data.csv`中的性状数据）中的性状数据进行系统发育比较分析。关于更多细节，请参阅README文件和论文的方法部分。