genbank-2025.04-protozoa-k31_0.9995_pretrained.zip (for YACHT >= 2.0.0)

For YACHT 2.0.0 or later; YACHT 1.x cannot use this database. YACHT pretrained reference database genbank-2025.04-protozoa-k31_0.9995: GenBank protozoan genomes (April 2025). 2076 genomes (from 2346 genome sketches; ANI threshold 0.9995). Download with yacht download pretrained_ref_db --name genbank-2025.04-protozoa-k31 --ani_thresh 0.9995. Sources, licenses, identifiers, how coarse the database is and how to retrieve the genomes are in the data card README.md (in this record and inside the zip).