RNA-Seq counts datasets
收藏DataCite Commons2022-07-01 更新2024-07-29 收录
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https://figshare.com/articles/dataset/RNA-Seq_counts_datasets/20216858
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Processed gene expression profiles of tissue types from eight species. The genome assembly (FASTA file), GTF annotation, and transcriptomic data were obtained from Ensembl v94. The raw RNA-Seq FASTQ files for eight species were collected from NCBI GEO and EBI ArrayExpress. Reads were mapped to the corresponding genome using STAR (v2.7.1a) after trimming adapters using Cutadapt (v1.16). The library preparation protocol strand type of each library was inferred using the infer_experiment.py module in RSeQC (v4.0). Genes annotated in the GTF files were quantified using HTSeq-count (v0.13.5).
提供机构：
figshare
创建时间：
2022-07-01
