Annotated genes based on Suijing18 Denovo assembly version 1
收藏Figshare2023-06-05 更新2026-04-08 收录
下载链接：
https://springernature.figshare.com/articles/dataset/Annotated_genes_based_on_Suijing18_Denovo_assembly_version_1/5258125/1
下载链接
链接失效反馈官方服务：
资源简介：
Mask the repeats by RepeatMask with parameter setting as “-nolow -no_is -norna” and then annotate the genome by multiple tools including GENEID with parameters for rice, GeneMark with setting of --ES --cores 24 --min_contig 100, SNAP with default setting, and AUGUSTUS 21 with –species = rice. We compared the CDS and protein sequences from other rice genome by using PASA with default setting and GeneWise with setting of “splice_gtag -sum -gff –quiet”. All the results were integrate and screened by using EVidenceModeler (EVM).
提供机构：
Zheng, Tian-Qing; Wang, Chun-Chao; Xu, Tian-Tian; Liu, Yu-Qiang; Chen, Yu-Bao; Yan, Peng-Cheng; Gao, Shi-Wei; Li, Zhi-Kang; Nie, Shou-Jun; Chang, Hui-Lin; Xu, Jian-Long; Peng, Wei; Liu, Qing
创建时间：
2017-12-14
