Phylogenetic datasets for Mouchet et al. (2026) Phylogeny of SK potassium channels and functional characterization of the conserved phenylalanine in their S3–S4 loop through mutational analysis

# Mouchet et al. 2026: Archive content for v1

## Overview

├── command-line.sh
├── fasta
│   ├── Alignement_SK_F.fa
│   ├── Alignement_SK_Y.fa
│   ├── hmmer-search-full.fasta
│   ├── hmmer-search-full-pr-cdh.fasta
│   ├── hmmer-search-full-pr.fasta
│   ├── linsi_SK_F.fasta
│   ├── linsi_SK_F-renamed.fasta
│   ├── linsi_SK_F-renamed-ts.fasta
│   ├── linsi_SK_Y.fasta
│   ├── linsi_SK_Y-renamed.fasta
│   ├── ts_linsi_SK_F_Y-renamed-a2p.fasta
│   ├── ts_linsi_SK_F_Y-renamed.fasta
│   ├── ts_linsi_SK_F_Y-renamed-pr_realing-enriched-ts_hmm-a2p.fasta
│   ├── ts_linsi_SK_F_Y-renamed-pr_realing-enriched-ts_hmm-a2p-id.fasta
│   ├── ts_linsi_SK_F_Y-renamed-pr_realing-enriched-ts_hmm.fasta
│   └── ts_linsi_SK_F_Y-renamed-pr_realing.fasta
├── hmmer
│   └── hmmer-search.tsv
├── phylogeny
│   ├── new-enriched-full-dataset-auto.contree
│   ├── new-enriched-full-dataset-auto.log
│   ├── new-enriched-full-dataset-auto.treefile
│   ├── new-enriched-full-dataset-auto.ufboot
│   ├── SK_F-Y.contree
│   ├── SK_F-Y.idm
│   ├── SK_F-Y.log
│   ├── SK_F-Y.treefile
│   └── SK_F-Y.ufboot
├── README.md
└── script
└── cdhit-tax-filter.pl

4 directories, 29 files

- `README.md`: this file.

- `command-line.sh`: examples of bash commands to use or generate the files
stored in this archive.

## fasta

This directory contains FASTA files corresponding to intermediate and
final datasets used at different steps of the phylogenetic analyses.

## hmmer

This directory contains the tabular (.tsv) output dowloaded from
the HMMER webserver. Searches were performed against
Reference Proteomes (release 2025_01), and the file contains metazoan
hits with associated alignment and score metrics.

## phylogeny

This directory contains raw IQ-TREE outputs for both preliminary
and final SK-channel trees.

## script

Perl script used to deduplicate protein sequences at species level.