Additional file 3: of Genetic diversity of avocado (Persea americana Mill.) germplasm using pooled sequencing

Table S3. A list of single nucleotide polymorphisms (SNPs) in avocado transcriptome. Header descriptions: Contig – mRNA contig ID; Position – SNP position; Ref allele – Allele call on the reference contig; Alt allele – Allele call which is different from the reference allele; Guatemalan coverage – Reads’ depth of the Guatemalan pool sequencing; Guatemalan alt prop – proportion of the alternative allele; Mexican coverage – Reads’ depth of the Mexican pool sequencing; Mexican coverage – Reads’ depth of the Mexican pool sequencing; WestIndian coverage – Reads’ depth of the WestIndian pool sequencing; WestIndian alt prop – proportion of the alternative allele; Guatemalan – Guatemalan polymorphism call; Mexican – Mexican polymorphism call; WestIndian – WestIndian polymorphism call; Contig sequence – Sequence of the contig; Polymorphism call description: AA – homozygous to reference allele; BB – homozygous to alternative allele; AB - heterozygous (XLSX 50424 kb)