Deschner D. and Hill J. E. 2025 Genomic Differentiation of <i>Mannheimia haemolytica</i> genotypes

Supplementary data for Deschner D. &amp; Hill J.E. 2025 (Genomic Differentiation of <i>Mannheimia haemolytica</i> genotypes)<br>Pantools file consists of all output files from all analyses conducted utilizing PanTools (Jonkheer, E. M., van Workum, D. J. M., Sheikhizadeh Anari, S., Brankovics, B., de Haan, J. R., Berke, L., van der Lee, T. A. J., de Ridder, D., &amp; Smit, S. (2022). PanTools v3: functional annotation, classification and phylogenomics. <i>Bioinformatics</i>, <i>38</i>(18), 4403–4405. https://doi.org/10.1093/BIOINFORMATICS/BTAC506)<br>CaZyme Analysis Files consist of all output files from dbCAN3 annotation (Zheng, J., Ge, Q., Yan, Y., Zhang, X., Huang, L., &amp; Yin, Y. (2023). dbCAN3: automated carbohydrate-active enzyme and substrate annotation. <i>Nucleic Acids Research</i>, <i>51</i>(W1), W115–W121. https://doi.org/10.1093/NAR/GKAD328)<br>The run scripts consist of custom BASH scripts for executing the listed annotation software (interproscan, dbcan, and emapper) on a large number of files rather than individually