Supplementary data Common chaffinch genome assembly

Supplementary data from Chromosome-level genome assembly of the common chaffinch (Aves:Fringilla coelebs): a valuable resource for evolutionary biology.
We include the common chaffinch (Fringilla coelebs) genome assembly, as well as the supplementary methods, figures, tables and files described in the article.
Supplementary Materials

Supplementary Methods:
-Sequencing and genome assembly pipeline.
-Assembly quality control.
-Gene annotation and function prediction.
-Non-coding RNA prediction and identification.
TableS1. Assembly quality statistics

TableS2.
Classification of repeats of
the common chaffinch assembly.

Figure
S1. Screen for possible contamination using
BlobTools.
Figure S2. Distribution of microsatellites motif lengths.

Figure S3. Microsatellite count and sequence length correlation.

Supplementary Files:

File
S1. Microsatellites:

-Microsatellites and their genomic position.

-Length distribution of microsatellites.

-Frequency of occurrence of microsatellites on every scaffold.

File
S2. Genome annotation in general feature format.

File
S3. Information table about predicted genes with
SwissProt, the Zebra finch genome, InterPro and GO terms.

File
S4. Predicted output of tRNA-SE scan.

File
S5. Sequence and structure of tRNAs.

File
S6. Predicted ncRNA types.

Protein fasta file
Cds fasta file