Additional file 4 of Simplitigs as an efficient and scalable representation of de Bruijn graphs
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Additional file 4. Detailed information for the compression experiment. Supplementary Table S15. Size characteristics of the stored de Bruijn graphs for single genomes of 6 species (S. pneumoniae, E. coli, S. cerevisiae, C. elegans, B. mori, and H. sapiens) and 2 bacterial pan-genomes (S. pneumoniae and N. gonorrhoeae) for each of the 4 studied methods, k = 18, 31, before and after compression using xz. Supplementary Table S16. The resulting compression ratios for individual experiments.
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2021-04-07
