Omics Datasets to Create a Composite Protein Database from Cephalopod Salivary Apparatus for In silico Enzymatic Digestion and Peptide Library Generation

Database A—protein database from proteogenomic analyses of the Octupus vulgaris salivary apparatus, built by Fingerhut et al. (2018). DOI: 10.1021/acs.jproteome.8b00525, but retrieved from DOI: doi.org/10.3390/data5040110.
Database C—proteins identified with Proteome Discoverer using 12 raw files against the UniProt database for the Metazoan taxonomic selection, built by Almeida et. al (2020) DOI: 10.3390/antibiotics9110757, but retrieved from DOI: doi.org/10.3390/data5040110.
Database D—proteins identified from de novo transcriptome assemblies of 16 cephalopods’ Post Salivary Glands by TransDecoder, built by Almeida et. al (2020) DOI: 10.3390/antibiotics9110757, but retrieved from DOI: doi.org/10.3390/data5040110.
Database E—proteins identified from de novo transcriptome assemblies of 16 cephalopods’ PSGs using a six-frame translation tool, which are not included in Database D, built by Almeida et. al (2020) DOI: 10.3390/antibiotics9110757, but retrieved from DOI: doi.org/10.3390/data5040110.
Database F—proteins obtained using a six-frame translation tool using the transcripts profiled in the transcriptome of O. vulgaris [10.1021/acs.jproteome.8b00525] , but not included in Database A. Built by Almeida et. al (2020) DOI: 10.3390/antibiotics9110757, but retrieved from DOI: doi.org/10.3390/data5040110.