FitHiChIP: Identification of significant chromatin contacts from HiChIP data

FitHiChIP is a computational method for identifying chromatin contacts among regulatory regions such as enhancers and promoters from HiChIP/PLAC-seq data. <strong>Functionalities</strong> of FitHiChIP include: 1) Calling significant interactions / loops / contacts from a HiChIP / PLAC-seq data 2) Identifying peaks (enriched segments) from a HiChIP data (i.e. HiChIP peak caller) 3) Finding differential loops among non-differential loci between two different categories of HiChIP samples, each with one or more replicates. <strong>GitHub page</strong>: github.com/ay-lab/FitHiChIP <strong>Documentation</strong>: https://ay-lab.github.io/FitHiChIP/ <strong>Citation</strong>: Please check the above documentation regarding citation of FitHiChIP About this repository: All the data and results provided here correspond to the published manuscript. The file <strong>Data_Summary.xlsx</strong> summarizes for each figure, corresponding tables storing the related datasets.