Supplementary Data for: Human pathogenic RNA viruses establish non-competing lineages by occupying independent niches

<strong>Alignments</strong> ORFeome alignments (excluding stop codons) with the exception of SARS-CoV-2. <strong>Correlated Subtrees</strong> Subtrees representing all correlated-clades (genealogical lineages; GL) in Newick format. <strong>Diversity TMRCA and Skyline Plots</strong> .png files. <strong>e/d/n/o Subtrees</strong> EVA and H3N2 subtrees, evenly and diversely sampled as well as “early” and “late” subtrees for H3N2. <strong>Genealogical Trees</strong> Including global topologies (.main), subtrees, and grafted trees (.grafted). <strong>ORF References</strong> The first and last nucleotide of each ORF in the reference sequence. <strong>Redundancy Tables</strong> List of all redundant isolates and the corresponding representative in the ORFeome-unique alignment. <strong>Reference Sequences</strong> Genbank page for all reference sequences. <strong>Rooted Trees</strong> Global topologies for each virus. <strong>Ultrametric Trees </strong>For each global topology.