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Characteristics of TE families within the R1 and R2 groups.

NIAID Data Ecosystem2026-03-08 收录

转座元件分类

基因组比较分析

数据链接：

https://figshare.com/articles/dataset/_Characteristics_of_TE_families_within_the_R1_and_R2_groups_/1002960 数据链接链接失效反馈

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资源简介：

1Designations and descriptions from [25]. TE families are listed when they consist of >10 subfamilies.

应用场景：

创建时间：

2014-04-17

水稻基因组

基因组比较分析

The genomic positions relative to the Nipponbare genome of overlapping contigs of the indica and japonica dispensable genomes. Genomic positions were determined using an integration approach based on

DataCite Commons2024-12-13 更新60

Comparison of repeat annotation for CARP and RMD.

重复序列注释

基因组比较分析

Summary of specific repeat content from CENSOR output, using a combined library of Repbase ‘Vertebrate’ with CARP or RMD consensus libraries. IR = Interspersed Repeats SD = Segmental Duplications.

NIAID Data Ecosystem50

Pairwise comparisons of LVF3 against type strain genomes from TYGS (Meier-Kolthoff and Göker, 2019).

基因组比较分析

细菌分类学

Reference: Meier-Kolthoff JP, Göker M. TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nat Commun. 2019;10:2182. (XLSX)

NIAID Data Ecosystem40

Additional file 2 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

代谢途径

基因组比较分析

Additional file 2:Distribution of genes encoding enzymes of the shikimic acid pathway in host-associated Bacteria. (XLS 571 KB)

NIAID Data Ecosystem60

Additional file 3 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

产甲烷微生物群落

基因组比较分析

Additional file 3. Average nucleotide identity between MAGs in this study and genomes in NCBI database (hit with 85% similarity).

Figshare2020-02-15 更新50