Additional file 1: of Enhancer variants associated with Alzheimerâ s disease affect gene expression via chromatin looping

Tables S1 List of 392 non-coding AD SNPs. Table S2 List of 127 tissues or cell types. Table S3 List of 25 chromatin states from ChromHMM. Table S4 Gene functional enrichment analysis using DAVID database. Table S5 Gene functional enrichment analysis using the MSigDB database. Table S6 Differentially expressed genes (DEGs) between AD and non-AD in each brain tissue in each dataset. Table S7 List of neuronal tissues or cell types in which 19 SNPs are located in TF-binding sites from ENOCDE ChIP-seq data. Table S8 List of tissues or cell types in which AD candidate gene loci showed enhancer activity. Table S9 List of tissues or cell types in which rs1476679 or rs7364180 loci showed enhancer activity. Table S10 List of tissues or cell types in which rs1476679 or rs7364180 loci are located in CTCF-binding sites from ChIP-seq data in UCSC genome browser. Table S11 ChIP-seq experiments recorded in ChIP-Atlas. Table S12 Diseases associated with SREBF2. Table S13 SREBF2 targets from TRRUST. (XLSX 71 kb)