Gene Data Tables from: Pangenomics Links Boll Weevil Divergence with Ancient Mesoamerican Cotton Cultivation

These supplementary data tables represent gene annotations, gene ontology terms (GO), and gene coordinates from the boll weevil (Anthonomus grandis grandis, Agg) reference genome that appear in selectively swept regions and structural variations between the subspecies Agg and Agt (Anthonomus grandis thurberia). These genes were determined from two computer programs for selective analysis: RAiSD and PCAdapt. The gene tables are organized by shared/unique genes per sub-species and shared/unique genes residing on SVs, structural variations, per sub-species, which is based on >80% sequence identity. These data provide supplementary details for the enrichment tests that were carried out to associate gene function with subspecies biology, described in more detail in the manuscript: Pangenomics Links Boll Weevil Divergence with Ancient Mesoamerican Cotton Cultivation. This work is relevant to cotton managers throughout United States cotton growing regions, our international collaborators, as well as genome biologists investigating structural changes in genome architecture and their association with adaptation and trait plasticity.

这些补充数据表展示了来自棉铃虫（Anthonomus grandis grandis, Agg）参考基因组的基因注释、基因本体术语（GO）以及基因坐标，这些数据涉及亚种Agg与Agt（Anthonomus grandis thurberia）之间的选择性清扫区域和结构变异。这些基因通过两种计算机程序进行选择性分析确定：RAiSD和PCAdapt。基因表按照每个亚种共享/独特基因以及位于结构变异（SVs）上的共享/独特基因进行组织，这些结构变异是基于超过80%的序列同源性。这些数据为基因功能与亚种生物学之间关联的富集测试提供了补充细节，详情可参见论文《泛基因组研究将棉铃虫的分歧与古代中美洲棉花栽培联系起来》。该研究对于美国棉种植区的棉花管理者、我们的国际合作伙伴以及研究基因组结构变化及其与适应性及性状可塑性问题相关的基因组生物学家均具有重要意义。