Processed source data and analysis code for proteogenomic and perturbation analysis of SGTA in lung adenocarcinoma

This versioned research compendium contains analysis and figure scripts, processed statistical outputs, figure-level source data, provenance records, audit files, experimental source data and available western-blot acquisition images supporting a proteogenomic and perturbation analysis of SGTA in lung adenocarcinoma. Version 2.0.0 integrates the frozen public-data benchmark with A549 and NCI-H1573 loss-of-function experiments, exploratory A549 RNA sequencing (GSE337720), IRE1α–XBP1s context analyses and A549 xenograft validation. Complete uncropped western-blot membranes were not retained, and the available files are not represented as complete uncropped membranes. Raw TCGA, GEO, CPTAC/PDC, MSigDB and DepMap matrices are not redistributed. Original code is licensed under MIT; study-generated processed outputs, figures, provenance and documentation are licensed under CC BY 4.0.