AntiSMASH and RAST Results for Diaminobutyricibacter sp. McL0608
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下载链接:
https://figshare.com/articles/dataset/AntiSMASH_and_RAST_Results_for_Diaminobutyricibacter_sp_McL0608/29178488
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资源简介:
Secondary metabolite clusters were predicted for Diaminobutyricibacter sp. McL0608 using antiSMASH v8.0.1 [1] and RAST [2].
AntiSMASH:
The AntiSMASH output can be found in the attached zip file, with the following predictions:
Region
Type
From
To
Region 1
NAPAA
284,318
318,280
Region 2
terpene
610,384
631,046
Region 3
terpene-precursor,betalactone,terpene,RiPP-like
2,135,184
2,194,481
Region 4
RiPP-like
3,060,803
3,071,117
Region 5
T3PKS
4,091,680
4,132,750
RAST:
The RAST output of the predicted genes can be found in the spreadsheet:
RAST_Annotations_Diaminobutyricibacter_McL0608_Summary
Which includes 2 predicted secondary metabolites, auxin synthesis and alkane biosynthesis.
References:
[1] Blin K, Shaw S, Vader L, Szenei J, Reitz ZL, Augustijn HE, Cediel-Becerra JDD, de Crécy-Lagard V, Koetsier RA, Williams SE, Cruz-Morales P, Wongwas S, Luchsinger AES, Biermann F, Korenskaia A, Zdouc MM, Meijer D, Terlouw BR, van der Hooft JJJ, Ziemert N, Helfrich EJN, Masschelein J, Corre C, Chevrette MG, van Wezel GP, Medema MH, Weber T. 2025. antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation. Nucl Acids Res https://doi.org/10.1093/nar/gkaf334
[2] Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomason JA, Stevens R, Vonstein V, Wattam AR, Xia F. 2015. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Scientific reports 5:8365 https://doi.org/10.1038/srep08365
创建时间:
2025-06-11



