five

GeoMx Cancer Transcriptome Atlas (CTA) mRNA assay on 191 ROIs from a NSCLC tumor.

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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE174743
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Dense spatial gene expression profiling of a NSCLC tumor. This study was part of Danaher & Kim et al., "Advances in mixed cell deconvolution enable quantification of cell types in spatially resolved gene expression data" Five NSCLC tumors were profiled with the GeoMx Cancer Transcriptome Atlas RNA assay. 20-24 ROIs were chosen from each tissue, and tumor (PanCK+) and microenvironment (PanCK-) AOIs were collected from each ROI. Matching GeoMx protein data was collected on the same tissues and ROIs.
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2022-02-08
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