Data from: Genome-wide patterns of regulatory divergence revealed by introgression lines

R source, markdown and helper fileThe zip file contains all the source code used in our study (Guerrero_etal_source.R), as well as the R markdown file (Guerrero_etal_SuppInfo.Rmd) used to produce the Supporting Information (the .pdf output is also included). Two more files necessary for running the scripts (isNIL_bool_*) are included. These have the information on the state of each gene in the S. lycopersicum genome with respect to the introgressed regions in each introgression line. An allele can be introgressed (coded "true") or background (coded "false")Guerrero_etal_scripts.zipAnther (pollen) gene expression dataGene expression in pollen (microarray data) for 4 S. lycopersicum x S. pennellii introgression lines, and for S. lycopersicum. Protocols described in the GEO entry.Carpel (seed) gene expression dataGene expression in seed (from microarrays) for 3 S. lycopersicum x S. pennellii introgression lines, and for S. lycopersicum. Protocols described in the GEO entry.Gene expression in vegetative tissueProcessed data generated from RNA-Seq data from apices of 74 S. lycopersicum x S. pennellii introgression lines, and the two parents, from Chitwood et al. (2013; The Plant Cell, 25). Please see Readme.txt for further details on how to obtain the raw data.Leaf_sun_expression.txt