Bioinformatiha25 Tutorial on Intercellular signaling in Single Cell RNA

Here you will find all the materials and instructions needed to follow the hands-on sessions.This tutorial will use two main analysis packages to meet different user preferences and levels of proficiency: a Python-package, i.e. CellPhoneDB, and a R package, i.e. scSeqComm! You may choose to work in either Python or R, depending on your background . ⚙️ Setup Instructions (Before the Tutorial) To participate in the hands-on sessions, you will need to set up your environment and download the required materials in advance. 📥 Installation Python-based analysis: Install the CellPhoneDB package by following the official documentation:https://cellphonedb.readthedocs.io/en/latest/ R-based analysis: Install the Seurat and scSeqComm packages by following their installation guides: Seurat https://satijalab.org/seurat/articles/install.html scSeqComm https://gitlab.com/sysbiobig/scseqcomm ⚠️ Installing all the packages is not mandatory — you can use the language you prefer, or simply follow along using the provided pre-rendered HTML walkthroughs if you do not wish to run code locally. 📁 Download the Tutorial Materials Download all tutorial materials from the shared repository folder. This includes: a Jupyter notebook (CellPhone.ipynb), a R Markdown script (scSeqComm.Rmd), the datasets (.h5ad for Python and .rds for R) and pre-rendered HTML versions of the tutorials. 🆕 Slides are now available